Concept

Posterior mean — where it appears

The expectation of a parameter under the posterior, which is the estimate that minimises expected squared error under that posterior. It is a compromise between the prior's centre and the data's, and how far towards each is the whole content of the prior's influence.

Named by 9 essays across 6 fields — each of them below, with the objects they name alongside it.

weakly informative — Beta(2, 2), updated by 5 of 20. The prior is worth 4 observations. With 20 observations the posterior mean is 0.292, against a data proportion of 0.250 and a prior mean of 0.500.

What a prior is worth

A prior is not a philosophical position, it is a component with a stated size. For a proportion it is worth exactly a + b observations, which turns "how much does the prior matter" from an argument into a subtraction.

bayes · Prior
What eight groups say about τ, when the truth is 1. The posterior density for the population spread after eight groups whose standard errors run from 0.5 to 2.1. The shaded band is the central 95% interval, from 1.02 to 4.44; the posterior median is 1.99 and the mean 2.18. The vertical mark at 1.07 is the moment estimate that empirical Bayes substitutes and then treats as known.

What the plug-in forgets

The shrinkage weight needs a population spread, and the population spread has to be estimated from eight numbers. Empirical Bayes estimates it, substitutes it, and proceeds as though it were known — and the interval that comes out covers 79% rather than the 95% it claims.

fullbayes · Shrinkage
Three priors on the spread, at a true τ of 0.5. The posterior for τ under a flat prior (mean 1.66), a half-Cauchy of scale 1 (1.32) and one of scale 0.25 (1.15). The three answers differ by 30% of the widest. The prior does visible work when eight groups cannot separate a small spread from none, and almost none when they can.

A prior on the spread

Integrating over the population spread means putting a prior on it, which sounds like the objection rather than the repair. The prior's effect is measurable, it is invisible where the groups are clearly different, and the reflex choice for a scale parameter turns out not to have a posterior at all.

fullbayes · Prior
The weight on the population, σ = 3. Each curve is one population spread τ. A group's estimate moves B = se²/(se² + τ²) of the way to the population mean, where se = σ/√n is what the group's own mean does not know. At τ = 1 a group of 9 observations sits halfway.

The weight that decides

B = se²/(se² + τ²) is not a compromise between two answers. It is exactly the posterior mean's weight, it agrees with a numerical integration to ten digits, and an argument that mentions no population at all arrives at almost the same estimator.

hierarchical · Shrinkage
How the truth, the raw means, the posterior means and the constrained estimates spread, standard error 1. Beyond two population widths above the centre lie 2.28% of the true values, 7.86% of the raw means, 0.234% of the posterior means, and 2.28% of the constrained estimates.

Estimates that are too alike

Posterior means give each group its least-error estimate, and as a set they are too alike: with each group's standard error equal to the population's spread, they spread 0.707 as widely as the truth. Beyond two population widths lie 2.28% of the true effects, 7.86% of the groups' own means, and 0.234% of the posterior means — a tenth of the truth. Rescaling the estimates to the right spread counts the tail exactly and costs 17% more squared error; summing each group's posterior chance of being beyond the line counts it without changing any estimate.

borrowed · Shrinkage
How many of a league table's top ten are small groups, ranked four ways. A hundred groups with sizes from 4 to 400, of which 36% have twenty units or fewer. Small groups make up 36.3% of the true top ten, 62.1% of the top ten by raw means, 13.4% by posterior means and 22.9% by the posterior chance of being in the top ten. The three rankings recover 4.43, 5.38 and 5.47 of the true top ten.

A league table of a hundred

A hundred groups with sizes from 4 to 400, and a top ten to publish. Ranked by their own means, small groups fill 62.1% of the top ten against their 36.3% share of the true top ten. Ranked by posterior means they fill 13.4%. The ranking built from each group's chance of being in the top ten recovers 5.47 of the true ten, the best of three and barely half; and the group ranked first could hold any rank from 1 to 31.

borrowed · Shrinkage
The extra 1/m, and the correction nobody quotes. What a pooled 95% interval covers against the number of imputations, counted over 2000 studies of 200 rows at 35.0% of outcomes missing. Rubin's rules — total variance W̄ + (1 + 1/m)B, read against a t distribution on (m − 1)(1 + W̄/((1 + 1/m)B))² degrees of freedom — cover 94.10% at two imputations and reach their promise by 5, at 95.25%. Dropping the (1 + 1/m) factor takes two imputations to 93.10%; using a normal quantile instead of the degrees-of-freedom correction takes it to 92.55%; dropping both takes it to 91.45%. The median degrees of freedom at two imputations is 12.95, which is why the second correction is the larger.

The variance between imputations

Pooling several filled datasets covers 94.10% at two imputations and reaches its promise at five, where a single fill covered 85.78%. The correction everybody quotes is the smaller of the two doing the work — 1.00 ± 0.22 points against 1.55 ± 0.28.

missing · Missingness
The top of a heavy-tailed population keeps its lead; the top of a light-tailed one gives it back. Select the top share on the first reading and read the group again: the share of its mean lead the second reading keeps, by integration over the true score (lines) and counted on 400,000 draws a parent in 20 batches (points, with two standard errors). The normal keeps exactly 0.6 at every selection. At the top half the Laplace keeps 0.541, the t 0.535 and the uniform 0.648 — the heavy tails keep LESS than the correlation. By the top one per cent the order has reversed: 0.761, 0.784 and 0.443. At one in ten thousand the t keeps 0.977 and the uniform 0.346.

A lead that a heavy tail keeps

Four populations whose readings all correlate at exactly 0.6, and whose least-squares slopes all read 0.6. Select the top one per cent on one reading and measure them again: they keep 60% of their lead if the true scores are normal, 76.1% if they are Laplace, 78.4% if they are a t on four degrees of freedom — and 44.3% if they are uniform. The correlation predicts the regression of the extremes for one shape of population only.

paradox · Rtm
Four 95% intervals for the odds after 2 of 20. credible, transformed: 0.0218 to 0.3964. Wald, transformed: -0.0305 to 0.3012. delta method on the odds: -0.0512 to 0.2734. delta method on the log-odds: 0.0258 to 0.4789. The first two are the same intervals for the proportion with their endpoints put through the odds; the last two are fresh approximations made on the new scale.

An interval for something else

An interval for the odds is free — put the endpoints through the odds and the coverage does not move, exactly, for any interval at all. The method everyone uses instead computes a new standard error on the new scale, and at twenty trials that costs four points of coverage, produces negative odds, and has no value at all when nothing was observed.

bayes · Credible

Named alongside it

The objects these essays reach for when they reach for this one.

PosteriorShrinkageHierarchical modelPartial poolingPriorCoverageEmpirical BayesFlat priorMarginal likelihoodMonte CarloPlug in estimateRegression to the mean

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