Concept

Imputation — where it appears

Filling a missing value with a number computed from what was recorded, so that an analysis expecting a complete table can run. The filled value carries whatever the filling rule knows and nothing else, so a rule that fills with too little variation shrinks every spread and correlation computed afterwards.

Named by 2 essays across one field — each of them below, with the objects they name alongside it.

A filled value is not an observation. What a 95% interval for the slope actually covers after each way of handling 35.0% missing outcomes, counted over 4000 studies of 200 rows. Dropping the incomplete rows covers 95.93%. Filling with the observed mean covers 13.85%, because the estimate itself has moved. Filling with a fitted value covers 80.85% against a closed prediction of 79.73%: the estimate is right and the reported standard error is short by a factor of 0.6567 against a predicted 0.6500, because the residual sum of squares is divided by the whole sample's degrees of freedom. Adding residual noise recovers the spread and covers 85.78% against a predicted 84.62%, since the interval still ignores the variance of having imputed at all.

One imputation is not an observation

Three ways of filling a missing outcome, under a mechanism that makes dropping the rows beyond reproach. Filling with the observed mean covers 13.85%, filling with a fitted value covers 80.85%, adding noise covers 85.78%, and the thing all three were meant to improve on covers 95.93%.

missing · Missingness

The extra 1/m, and the correction nobody quotes. What a pooled 95% interval covers against the number of imputations, counted over 2000 studies of 200 rows at 35.0% of outcomes missing. Rubin's rules — total variance W̄ + (1 + 1/m)B, read against a t distribution on (m − 1)(1 + W̄/((1 + 1/m)B))² degrees of freedom — cover 94.10% at two imputations and reach their promise by 5, at 95.25%. Dropping the (1 + 1/m) factor takes two imputations to 93.10%; using a normal quantile instead of the degrees-of-freedom correction takes it to 92.55%; dropping both takes it to 91.45%. The median degrees of freedom at two imputations is 12.95, which is why the second correction is the larger.

The variance between imputations

Pooling several filled datasets covers 94.10% at two imputations and reaches its promise at five, where a single fill covered 85.78%. The correction everybody quotes is the smaller of the two doing the work — 1.00 ± 0.22 points against 1.55 ± 0.28.

missing · Missingness

Named alongside it

The objects these essays reach for when they reach for this one.

Confidence interval Degrees of freedom Parameter uncertainty Plug in estimate Attenuation Between imputation variance Closed form Complete-case Fraction of missing information Least squares Mean imputation Missing completely at random

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